[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 19 items for (author: oikonomou & cm)

EMDB-25702:
Flagellar motor of Hylemonella gracilis
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-25703:
Flagellar MS-complex of Helicobacter pylori delta fliM fliP*
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-25704:
Flagellar MS-complex of Helicobacter pylori fliP*
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-25705:
Flagellar MS-complex of Helicobacter pylori delta fliQ fliP*
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-0464:
Legionella pneumophila bacterial flagellar motor
Method: subtomogram averaging / : Kaplan M, Ghosal D, Subramanian P, Oikonomou CO, Kjaer A, Pirbadian S, Ortega DR, Briegel A, El-Naggar MY, Jensen GJ

EMDB-0465:
Pseudomonas aeruginosa bacterial flagellar motor
Method: subtomogram averaging / : Kaplan M, Ghosal D, Subramanian P, Oikonomou CO, Kjaer A, Pirbadian S, Ortega DR, Briegel A, El-Naggar MY, Jensen GJ

EMDB-0467:
Shewanella oneidensis MR-1 bacterial flagellar motor
Method: subtomogram averaging / : Kaplan M, Ghosal D, Subramanian P, Oikonomou CO, Kjaer A, Pirbadian S, Ortega DR, Briegel A, El-Naggar MY, Jensen GJ

EMDB-8603:
Sub-tomogram average of the archaellar motor in Thermococcus kodakaraensis
Method: subtomogram averaging / : Chang YW, Kjaer A, Briegel A, Oikonomou CM, Jensen GJ

EMDB-2414:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked off - tsr mutant M222R
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5541:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked off - tsr mutant A413T
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5542:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - low kinase activity state - tsr mutant P221D
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5543:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - low kinase activity state - tsr mutant EEEE
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5545:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - high kinase activity state - tsr mutant QQQQ
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5546:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked on - tsr mutant I241E
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5547:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked on - tsr mutant G235E
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5548:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - high kinase activity state - tsr mutant QEQE
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5549:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked off - tsr mutant A413T, deletion of subdomains P1 and P2 from CheA
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5550:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked off - tsr mutant A413T, subdomain P2 deleted from CheA
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

EMDB-5716:
Signaling in Chemoreceptor Arrays Through Mobility Control of Kinase Domains - kinase activity state locked off - tsr variant P221DdeltaP1P2
Method: subtomogram averaging / : Briegel A, Ames P, Gumbart JC, Oikonomou CM, Parkinson JS, Jensen GJ

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more